Scaffold Ga0209087_1018972

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1018972
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3401
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021263	Metagenome	219	Y
F022373	Metagenome	214	Y
F046865	Metagenome	150	Y
F075854	Metagenome	118	Y
F090062	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_101897210	F090062	AGGA	MLISEQLRRKARVIYNNDMVPEHINRHNQRKWVRAVLRLGDHWLTAKPIGRLNATESNP
Ga0209087_10189722	F075854	GGAG	MPRPKPPMPLKGRQVRMSDVEWLIFLELGGADWLRKIVKQKAKLPLQHYKDENERMQKGI
Ga0209087_10189723	F046865	GAGG	MIIKQLDPVTNQIRNNTLEEVAKEFEAMKNGGDTTASFASYVRSMKK
Ga0209087_10189727	F021263	GAG	MTDSEREMDLILGEIELEVRRLKKVEQAALAVVKAFTNSIDYNTWDEALDKLEAVLKEKN
Ga0209087_10189729	F022373	GGAG	MQPKVILEFTYPDDEDRLLFAIKGPEMYKALTNIKMAVTGSFNTKADLNAVLDRVQDLTDQIFKELGE