Scaffold Ga0209087_1013752

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1013752
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4083
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019099	Metagenome	231	Y
F023293	Metagenome	210	Y
F032573	Metagenome	179	Y
F057197	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10137523	F057197	GAGG	MANFETWQYQNLVQFAKEATERMNLLNAEVEALNADLKAAINAYRDLLRRDALGFLETSHPTETEKTGE
Ga0209087_10137525	F019099	GGAGG	LIINGRIVKDWDKSQISTGYQRPNQFRIVTWDMGRVQGWLLGQNPLARNIIEKVIR
Ga0209087_10137526	F023293	GAGG	MRYGILDDEGNVVRWVWHMPTYPHIVQKIKRKRKPPLDLSNVPEALF
Ga0209087_10137528	F032573	AGG	MTKSEAWRKWWSVIHKTIPAGSYDPREAFMWEAWEAAWEEATKQSKTEITHLKEQLMRSNTHDGAYKAAFLAGQMAARGGSWK