NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1012537

Scaffold Ga0209087_1012537


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1012537 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4296
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012774Metagenome / Metatranscriptome277Y
F013085Metagenome274Y
F016809Metagenome / Metatranscriptome244Y
F041601Metagenome / Metatranscriptome159Y
F062761Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10125371F016809N/AMSKTNNEFMKQQLTGSIGGDEDFLYEQYIAQEQMNEEYWQWKNEKSHSIFPDEVQYNDEYYKSSYLPTPDEESENYKQTKQNGHT
Ga0209087_10125372F013085N/AMDILSEIIEVSNEIIESLEENDFFLENPFVEQIPLLRALQIKMQRKWEQEGEIFLDEVEFFEVCKNVSNNQIGKTIEDLVDKGALDMSVNEDGEILYSANKDFQFEKDEDEIQ
Ga0209087_10125375F062761N/AMGFNHCYLTSIENLQTHLDNVGLEKFIKMYRSYDALTGPSECFEFIEEKIKDYEKVIRNISDMDLC
Ga0209087_10125378F012774N/AMPIILHIDLENQSVNDWLEENRYIIFSELVRYAKKLLTEKLDNVQAIMVSNYYDNLVFILKRENLKLTLEKAMEYFMDIEEYEKCAQIRDLDILIQNLENETGNIKISKSNKRKSKIN
Ga0209087_10125379F041601N/AMKQEILKLVNQIKENLKSIDRDGVSHPLIDDVYEKLELIEDEIYEDDAQANALSFEDDDY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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