Scaffold Ga0209087_1011432

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1011432
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4528
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y
F058150	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10114322	F001106	AGGAG	MSFETLKVAELRKVAEDFAVDTDGIKSKADIVAALAEEGVTWSVYQKTIKDIEDATDEFSENAEEILPRFNPDAQPENTVLVRMTRENFRYDIAGFTFTKEHPFVAMTEEDAQEIFDKEEGFRLATPKEVQEYYA
Ga0209087_10114323	F058150	N/A	MEILVGSNSPITHKVFWQGQLTDSDSIPVVRLYDITEDPGVSPAINPATILSTLTPVKSEVDAGTYVVYIPLAYTDRQRQLKLSWSYSVSGTSTQKDNKIFVQTPYTDMSQAIESLGLGSDYSDPNTRSYAELANAERYARKLIEAYTKQQFFLYDDIQTAYGSGSDVLPLPYKISTLHKLYQNDILLLDTLNSVNNWNFNTVISESGFGIRVNRANMLDNTVYIANGMVPPTISDTWGGSFNAGATYRVQGKFGWKEVPDEVDLACIELMKDYFSKDKVWRNKYMKSIQTFDWKFEYNSGVYSGTGNLYADQLLLPYVLNQMVVI
Ga0209087_10114324	F056615	N/A	MYDLVDSVLPMFMDVYRQFDSQDPDTGAIKKEWQFDRTVPCSAKGIISNSSSSRTGDKQIISNRYANDQILQIRTTEKVTLREKITNIRDLEGIVIWEELNFPTNTPTVYELMGTTPMTDPFGAVIGYNSTVKRSENQEIGQ
Ga0209087_10114325	F035307	GGA	LDNSSLLVTAASGLQKGMAGTKGTILKDSTVAQISAAIYYHAQVVSKLTTNKAFEKKFQSVIFKQIEQDFGLYVDSQARMNPKSLHHVYEWNKVGNKGSRLFDLNVLSTNGLSFKITSKFKPSKSAVPNNFGKRRHVFINKASVMESGMPLVIRPKSAERLVFETSTGVVYMPKGASVTVTRPGGGKATGRFQIAYAQFFTGNLVNGAIKRSGFQQLFNSSLTKAMRVPSDVKKVKYSFNANTLNMQAESAIASAFGGAL
Ga0209087_10114326	F000258	GGAGG	MTDYKADVMLDLRKYLWSQLKSNNIFTATDYYSDNIGQEIVPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDDSARDTTLYSGSSSKFKFYSIFVADISPTSPSEELAGFLSADVILEVKYARHLDTTGRFA