Scaffold Ga0209087_1008430

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209087_1008430

Scaffold Ga0209087_1008430

Overview

Basic Information
Taxon OID	3300027734 Open in IMG/M
Scaffold ID	Ga0209087_1008430 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5383
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004451	Metagenome / Metatranscriptome	437	N
F046370	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10084302	F004451	AGGA	MRPILDNYISAHYKEIRKYTNYFLVRMKSTISADAVINNSFLYLCNIDIEVTDPGKVKAYLLNTIKMQILWSTSLTNRQERVTATDNTMPIVMDDDTDLWDKIREDMQYQNNMAVIETYRGRITDRIKLIVFQTYFDKGYSTARAMAEYFKIPVTSAHYWIQEIKNDLKNLRDEN
Ga0209087_10084309	F046370	N/A	MATTIIAQPQVLMPAYNPIKYIIDNTNKNEPGFRYIFTIYPAASNTVIAQYRVLPVFSTGYGEQDISRLMQSLVTWNFTSGQVNESWYQYKIRLGYEYIDNILYTDDLAPDGLNTLIEYTAHGFVVGDQVVITQADGGVANPALEGLHTVITVDNANQFTVNVLWSTITDDTINGTVTYADLRKTQVIDDEIIEDQEVFNGAFSLGIYAQGSFPSASYLGTTNPSFALTSLGNPANPSSATNAAALVADSGFIYYLMCRVYSGVTYTMSYYNTVGDSLFLGPFSHNPADGLYNFQVDPSTSANQNFYVEIVGDNGSEFRYYFQYDNRCAINEDVLYYLDRMGSWQHFAFQLKTYEKGQITREMYNQHVDGYVDGANEWVYSSDAMGSRTYNINVSNTLDLNTNWMDQYNADRFQELLTS

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