Scaffold Ga0209087_1008376

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1008376
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5398
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005233	Metagenome	407	Y
F090308	Metagenome	108	Y
F091934	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10083763	F005233	AGGAG	LRHHRKEVYTNCNEATSATPAQTYAMLEHLINGEFEPDVVATTMAMPLPFSEAAPADIIDAQVQTANWLKELELDDDEAESKADAQAARQSFASLVTGQPPQNTQQALANIKAPAAVQHLVGMLTAYDWAFVEQAKELRGYAVAQILKEVEHPDARIRLKALDMLGKVTEVALFTERVEIKKTQMSDIELETRIKDKLNRFMGVIDVIDVTEEKLDEA
Ga0209087_10083767	F091934	GGAG	MRNLIQPITKEVGIITIRGRDYHMQTISYGSQHHVHVFRKGALHLRGLVFETQAAYDAWRNGMHQLDLPFGEISPQGHQ
Ga0209087_10083768	F090308	GGAG	MYETYIKLTPNELHNRLLERNIHPAEMERIKQEVADLKETLRVSRITRTQRKAEWDKVLQPLRYEINNAKVGMRYGGEKSPQEQRQLAFSEYIRIMEKLVAMLDAPAKALDSTPIQIARDKGLPNDGEHWTDWIPARVKDKVSLLFDAVPVVPRGKRKTPFQRTMLPHQHETAKVRLLTKTRKEMESLERKAGIQPTDARTAKLAQMRRAIKIIETLDKNEAVPATWTKLNMEG