Scaffold Ga0209087_1008139

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1008139
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5482
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F004279	Metagenome / Metatranscriptome	445	Y
F006539	Metagenome / Metatranscriptome	370	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_100813912	F004279	AGGAGG	MGFIEIRNGSGFTLRMENDKESLNLSTDRCVSCNDDRLLHDGQYLVCTQCHCRQ
Ga0209087_100813913	F000141	GGA	MYTKFKCNGCDRKTEFLWLEQLDTPDGFKAYQCMDCGCVGVKNIAEALHIPDSNLDRCKQCGGWQFIGTGCHTCALIGAK
Ga0209087_10081399	F006539	AGTAGG	MIETTAPWIVLYTVLGYFIAWGVYSTIKDNAFQAGYWKGRKDGFDMYRRITDSKIDVDNN