Scaffold Ga0209087_1007071

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1007071
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5930
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F002487	Metagenome / Metatranscriptome	554	Y
F014143	Metagenome / Metatranscriptome	265	Y
F037607	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10070711	F037607	GAGG	MNFQWPINESSRIRALQGLRSKRVDTQIQPKEIDDWLKQSVALVAGCVRGLG
Ga0209087_100707111	F000166	GAG	MPNIPTAEDAKLFAQSVRKWQQVLSLGDWRIEKGSKPAKAAMASVEFNSSARLATYRLGDFGAEKITPESLDQTALHELLHVFLHDLMTVAQDPKSSQEEIEMQEHRVINLLEKLLSKDSNGK
Ga0209087_10070715	F014143	GGAG	MNTRFLTHVRKIFASYDAPPEVIRGYQKQWVKSVRNLGDKWLVAKPIERIQ
Ga0209087_10070716	F002487	AGG	MACSKAYRKNPMTRQDAINDLSHGDCQYCCYCTEPKTYGSCCGENHFVPFEDLYEEDKEAMIEEYLTQGNSNGT