Scaffold Ga0209087_1007006

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1007006
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5960
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018874	Metagenome / Metatranscriptome	232	Y
F046202	Metagenome	151	Y
F048114	Metagenome	148	Y
F078231	Metagenome	116	Y
F102518	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_100700612	F048114	GGAGG	LNYGKEGEGEDEHRHRCLVRGIIKMRIENRDSAYRWLNGYVDERGKRHKGWNELHPKSRLEADIREQWIKGNRGNEGEWK
Ga0209087_100700619	F018874	N/A	MNSEYEMHQLMLERQQMLEEALERAETGVATMEDWDIIRYECGLPKRPIVTLETVTLTRS
Ga0209087_10070064	F102518	AGGAG	MKKIFIAVCAISALVGCSSNKEPYITAQNLVMDRNVQPLSRGEQIDAIKDCQEAGLRARVIYAKRFVNGYSTETVIDVLCSNRYAF
Ga0209087_10070067	F046202	AGGAGG	MFNTFGEFFWAFMSLSGFMFWICMVIFIAMVIRRNRAKRKAYYE
Ga0209087_10070069	F078231	GAG	MKTEPDLIDIFAMLALIGLMQKPTKVAKSKIDIAYEAYEQAQAMLDVREDFINKRSD