Scaffold Ga0209087_1006276

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1006276
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6325
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012446	Metagenome / Metatranscriptome	280	N
F015582	Metagenome / Metatranscriptome	253	Y
F019614	Metagenome / Metatranscriptome	228	N
F071981	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10062761	F071981	N/A	MKITIEFDTDSASFDVDQYGEVDRILQQVGSYAYEYMLHPNYQLDRNNDKGHKIVDT
Ga0209087_10062763	F019614	N/A	MLEVSTXRVYSIYTMNVASIASNKIQVEYSAMPGDNREFLTFKVPNGWDDVKLLTNKVLTHNSKDFTFSGWNSDRNECYFVRLVNGPSFVASIR
Ga0209087_10062766	F012446	N/A	MKKLQKEFTGNYDKVGMNKFVQIRKENNVAIYQRFNADGTPRSYEVFIVKIVPKGAPLPNGKFVEESYEQYPGANAFGKTAFDCREIGQAEERFDQLVIKAKDSADAKEEAAKTGVPNRGRRASGNKIKLDMTLKSGTKFTAKFLMSVLGVTQPVLFPIIKQWQTDGLIKINGTVKGEGKGRPAAEYIVV
Ga0209087_10062767	F015582	N/A	MNTNIDPELQAEQLEDAKYLIELNHYVNTLATPSAEAVALYSAKLSNLEDIHTEIRSKYPDFMPIYDTSTDSVCNQDLGKYQEMTYSISQRDMRRE