NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1004902

Scaffold Ga0209087_1004902


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1004902 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7226
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001019Metagenome / Metatranscriptome804Y
F001460Metagenome / Metatranscriptome690Y
F002387Metagenome / Metatranscriptome565Y
F006846Metagenome / Metatranscriptome363Y
F013414Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100490210F013414AGGCGGMKTREIKVAEDLVNLTEDHWFNPAILARYLTDQPFYTVDRIMELVAQIIRWEANRYTDELDTEDGIYNSGLTSEGLFLANELNKTLNRLIKTYKWENIKLPVDPDKVIAKLPKVAEQSYRHSWLHDKDHRDPVLVSHPFI
Ga0209087_100490217F006846GGAGMENTQKRKTIIMIYDLVEKYLMRPKRLREAIQAVVHDNDELLRILKEYEKDDTPTNLTWSEGDTWYGWTYNRELKRYYFDDIGDQSLMALWENQWKRENEKE
Ga0209087_10049022F002387AGGAGGMASFLEDVNQMVIDAVYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDEFIYNEFNKFYNLKEGDEDYLC
Ga0209087_10049023F001460GAGGMLGYTESDLNKMINAVHDAKLFYLRYPSDLMDKTELRNDLEMAVSFMQGLWAEGYFDNTN
Ga0209087_10049026F001019AGGMTYEPTLEILEMEYSCSPGGVDTFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEASR
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