Scaffold Ga0209087_1004098

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1004098
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7975
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030333	Metagenome	185	Y
F032569	Metagenome	179	Y
F034448	Metagenome	174	Y
F040990	Metagenome	160	Y
F089853	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_100409810	F034448	N/A	MHVNNYTLPRPAESALDQCHLVVVNDPAFRMWAMKKYCWANKLSLVWSELVETSDVSAYFDEAAAFYFVDPADATLFRLKYK
Ga0209087_100409811	F030333	N/A	MIDRNPRLTIPVKTYTHYTECELWCQVNIGVWNESWWKDFPDMTMAVVVEGPHEDCYWFSNEQDALMFRLRFV
Ga0209087_10040985	F089853	N/A	MKIASVMAPIANSDPVSGHRYQGWTPCIKWCDEHCEGPWLFISEGVFEFEWDSDYVLFMLRWS
Ga0209087_10040986	F032569	AGG	MIRVNVLDDAFNHAYWNARRTLPVENLEQPRQYGRRWREAFKCRIDPNSPAETVYYIFDRDEDYTWFMLQWG
Ga0209087_10040988	F040990	N/A	MNYYYEIDPKYNSTPHGDKWRWWCMANCSPADNGKMCFKTHDEFVARSSRVWVENRNGVYQVHPIWHGHRSVDPHEFTLVKLKAKTIKWWQDEPG