Scaffold Ga0209087_1003612

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1003612
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8509
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050978	Metagenome	144	Y
F051079	Metagenome	144	N
F066722	Metagenome	126	Y
F096869	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_100361210	F066722	GGA	MEAGKTRFDMEQEIMTAWQVLDDIKMLSARAGTTQEDWDAVHRLYQIRFETLFETFEQLIKAGTIL
Ga0209087_100361218	F096869	AGGA	MMQDFYFEKIRDSVDDDWPESFSLDDLAKALNVERVSYRIYYSRDNLTCRLFVFRAHCTPAEMDTMLDMGFVFAQDNDTENIPDKPVEEIEE
Ga0209087_10036123	F051079	AGGA	MNDWDRSNLHFILDSDEATLEDFYSWATEDDLAYALSLVREARTELLIQEADILDEILTNATADDVADASTMLRKFQL
Ga0209087_10036125	F050978	N/A	MPCCFDYAMDTVNYIRLDCGSQQALAYKYQLDLDGLIVNQDYTWRYQKPVYDEFAWTDSEVSSVTFTFKNPALATFYQLKWLR