Scaffold Ga0209087_1002851

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1002851
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9614
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (100.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F023834	Metagenome	208	Y
F031792	Metagenome	181	Y
F082391	Metagenome / Metatranscriptome	113	Y
F093483	Metagenome	106	Y
F093528	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_100285110	F093483	AGAAGG	VTIERVQHSGALIVSALVYHEGLRWLESATYYGYEEGEAKRSFIESCARLRYELEEGEE
Ga0209087_100285114	F005558	GGAGG	MNQESMSWSELAELTHATQVERFNFCTCEDNEGQDNPYNDCPKENK
Ga0209087_100285115	F093528	AGGAG	MTEETTTHVVTLVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSEVPDKAVNDVVKEIQEEEGE
Ga0209087_100285116	F031792	AGGAGG	MGYEPELNDPIFYEEEEKEREIKCFICGDTLDEDDIVWADCEGQWQRRGREGNDTAWCVSCLPSEKGESNE
Ga0209087_100285117	F023834	AGAAGG	MNKEYWQAKAELCRDLALIQIQKEETEKEAGMNLMRMTYALSMVDAYAEGKGEK
Ga0209087_10028513	F082391	GGAGG	VDNNKVPRSVHFADFLVVLAGFVHNVASSVHTATEELMEIAVYNANRNTEVNKAWEQFSNDLETIEEDTDGR