Basic Information | |
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Taxon OID | 3300027734 Open in IMG/M |
Scaffold ID | Ga0209087_1002520 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10280 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (88.24%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009844 | Metagenome / Metatranscriptome | 312 | Y |
F042096 | Metagenome / Metatranscriptome | 159 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209087_100252011 | F042096 | AGGAG | MSGSDVKANSTTTTGSNVDLFGGPTRLKGFIATPTGTAGTVTFADDNVTIFSITTAASVASGPVSISLPDEGIKFGTKLQANLTNVAGLTVFFA |
Ga0209087_100252017 | F009844 | N/A | RNQMNKTQEYASEIPKKADARKQVPPLAADWVKENSTWFNKPGYRKETAMAYGIDAELTEEGWDVNDPEYYNEMTKRLKSSSLPHFSKSEESSSQTDKNVVQKANRVQSPVAGVSRKKGIDSNRVKLTSDDLDTARKFGIDINDEAALKRFAKEVKNFSDTGQL |
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