Scaffold Ga0209087_1002070

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1002070
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11444
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (55.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F023059	Metagenome	211	Y
F035669	Metagenome	171	Y
F093492	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10020701	F008741	N/A	TIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCLAQYHGVFELTSYVKAGHRMGDVIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTNIILDKLDDKPAEGLPESYNLVAPFGLSQGHYRNPLELIVRARQTMGKDNFFVLCPDEIKIQGLSTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTGFFPQKDEWETDNIFSFEGMTTMD
Ga0209087_100207013	F093492	N/A	MASLVIGSAIGSKVLQRQNFNKEPNGLETIIEAYAIQTANRDTIVPEKNTLHSAFSSSAKKYSRMVVESVTTEEQDGGITQMLVTFVGLTTLTGLPPAIVRLIPTEGAGIYGPPLTIEAEFVTDVSETDFIKGNINATASIKLGNISFGTVNQMPPIINGTQMPANPRPAGAVRRAGAFGQYFGYCVEAFSCERRGIFLIARTTYIEKEGLFRIV
Ga0209087_100207014	F035669	N/A	MRENQLNELQGTSILTKSFFNKLIRRIECTKPLAGSGITISEKENGFEISGGVGDGFAEVTLNVCKNGVPSTITVLAKA
Ga0209087_10020702	F005584	AGGAGG	MAGTIDTSYFRTDLQFMIADMFQTVTGLASSAVSASVTDLTTASELEIGGEVSRVTQSVVVLASAISAPTIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0209087_100207020	F023059	AGAAG	MFEAAIASLAGVVGIVFWWLKNRAKTRKERDDEEIAYHRRLRDAEVDSWIHRR
Ga0209087_10020704	F009142	N/A	MSNSVQINVEDALEDLLVGISGLNVYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVSVTIDYSDTAAKVSQQAFDAEYCLIFEAFYSETPPLFTKIQNNISGTRVYTARITGQTPTIKTAKRAWQRGLKMSLICTPQ
Ga0209087_10020707	F006138	GAGG	MAAVTIGTAGLSFGLVAEAGIGLVQSFSEARNVEKNEVRNNSGDIVAIGYFNATTSYSLSVAITGSYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS