Scaffold Ga0209087_1000852

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1000852
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18688
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (68.42%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005846	Metagenome	388	Y
F006138	Metagenome / Metatranscriptome	380	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F011284	Metagenome	292	N
F027777	Metagenome / Metatranscriptome	193	N
F035669	Metagenome	171	Y
F093492	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_100085212	F027777	AGGA	MSEEMPTFWHQEPAKKKLPNETTDEWVVRVFGAFPDTEFDSRNDFRFLNLPKTQKENAEGFGVFDDGQKKK
Ga0209087_100085215	F005846	N/A	MTSFPLPARPVASAVPASHKEFAKRTSIEGKLNGWCGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVHCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDISNNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPNYCSPSWQKHRIRW
Ga0209087_100085219	F011284	N/A	MTSEQGVEKTEEKVFTKKHDLHLTTLQMAAVESMERKYKKGVVENCGTKLWEMPTARLVEESIAEATDQMVYLLTLRQQMHIVMELARDGCTDETLTNPRARECCNLIYTTLTGQSKPQL
Ga0209087_100085226	F035669	AGG	MRESQLIELQGTSILTKSFFNKLIRRIEATKPLAGNLITIAEKDNGFEVSIEGYNPVTLNVCSGGVETEILVLAKAV
Ga0209087_100085227	F093492	GGTGG	MASVIIGSSIGATITSKVLQRQNFNKEPNGLETIIEAYAIQTANRDTVVPEKNTLHSAFSSSTKKYSRMVVESVTTEEQDGGITQMLVTFVGLTTASGLPPAIVRLIPTPDAGIFGPPLVIEAEFMTDINESQFIKGNISATAEIKLGNISFGQVNQMPAQINGTLMPSNPREPFTNKQQGLSLNNYFGYCTESYACERRGLFLVARTVYKEFELNFSFQ
Ga0209087_100085232	F006138	GAGG	MAAVTIGTAGLSFGLVAEAGIGLVQSFSEARNVEKNEVRNNAGDIVAIGYYNATTSYSLSVAITGAYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS
Ga0209087_100085235	F009142	N/A	MSNSVQINVEDALEDLLVGISGLNVYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVSVTIDYSDTAAKVSQQAFDAEYCLIFEAFYSETPPLFTKIQNNISGTRVYTARITGQSPTIKTAKRAWQRGLKMSLICTPQ
Ga0209087_100085238	F008741	N/A	TIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCLAQYHGVFELTSYVKAGHRQGDIIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTNIVLDKLDDKPAEGLPESYNLVAPFGLSQGYYRNPLELIVRARQTMGKDNFFVLCPDEIKIQGLSTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTGFFPQKDEWETDNIFSFEGMTTMD