Scaffold Ga0209087_1000572

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1000572
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23092
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019831	Metagenome / Metatranscriptome	227	Y
F040103	Metagenome / Metatranscriptome	162	Y
F098565	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10005722	F098565	AGGA	MTIRKLESKAVRAAIGTYIGRAGEISFDPSIGALKLSDGITPGGIAITEPTVINVADNRWYVDPSRTDINPASATGNITNPFLTITAALAYIEARIADGTLVINMSGTVVDNPQFVVLTSSTTEDVNLTRGHIYIVGDTPDAGHVPIWIHGHVTITPGGATKAINDFGLFHVAVLPTGNFHGVKVTGTAACRVYLENVYVYQGTSGYSCVYMDNSDASTKLELVDCTVGREAGSTYLVDIQSAYCKINNLETNGQGQALNFANAAAGTILNSVIDAGVGAVITLSGTVQFGMGNCILNNTSAAANTYGVTMSGTASMQFGVCTFNVPAAQATNRAINGVAGNVVLYADPIFQYGTCVKISTAITLLPLTTAFTAV
Ga0209087_100057234	F019831	N/A	VSLLRKTHLKQTQKPQLQRSNFDLDDSDLIIDDEVTFGRNRKAGEFGKIVDEDSALSDHVKFRLWLARQLALMKYREVHG
Ga0209087_10005728	F040103	AGGA	MKTILNTLYNVCIQIGQTRAACALARVGRYEEAKALMTK