NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000551

Scaffold Ga0209087_1000551


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000551 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23535
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (76.09%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011648Metagenome / Metatranscriptome288Y
F012854Metagenome / Metatranscriptome276Y
F023062Metagenome211Y
F024733Metagenome204Y
F037693Metagenome167Y
F085148Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100055113F024733N/AVKYKPFDQRLHDQCDPPARNAVAGWLKNLWLVDALPNPDKYAVDLVLSRKGEHIGYAEVEVRDWGMDFCPYNTIHIAQRKEKLFSHPRTTMYVVTRDLSHAYWIRADKIKNCPIIEVPNTAVAREEYFYDVPKNLWKYVDLRELF
Ga0209087_100055121F011648AGGAGMSEIEAQTNDLNQFQAHLERIFKDLEDGIFITQAEIADLRYACGLPQNSHVNPVLRDVINDFGNIFGATK
Ga0209087_100055128F085148GGAMNNFKDRINYLAQSYIAIAQRYRNWDMVKELIERNKDTEEAVKKRIKELLRK
Ga0209087_100055145F037693AGGAGMALVKVTVKCPHCKVDHEEYDATQYDDKEKYLAYWNIPFNTPEAEEAWQAKLNMTPKEAPMVMPDIEGHISMADGQWVSSRSKHRENLKRNNCIELGNDVPTQQKSHEFSKKQHQERKQQIAEIAYSKLNYR
Ga0209087_10005517F012854GGAGMSQLIDAIYKLYPQTVRTVGDEAFDAEGNQVAYDLQAVTAQAEADAQAIIDTRTSALAKLAALGLTQDEVKALVG
Ga0209087_10005518F023062GGAMAFEIDPVKYGVLWNKVESYEAKFDEVSKKIDKMEASIDELVAMANRSRGGFWVGMGFVSAISSIVGFIAHWFSNK
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