NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209087_1000422

Scaffold Ga0209087_1000422


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000422 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27054
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (82.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F001739Metagenome643Y
F002099Metagenome / Metatranscriptome593Y
F046906Metagenome150Y
F104706Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100042233F000166AGGMPNIPTPEQSQLFAQSVKKWQQVLSLGDWRIEKGSKAAKAAMASVEFNASARLATYRLGDFGAEKITPESLDQTALHELLHVFLHDLMTVAQDPKSSQDEVEMQEHRVINLLEKLLSRDSNGFT
Ga0209087_100042236F046906GGAMYDQKTNSQNKETTDRSERKTNPLGDANGKRNPVHLCFGYGNQLYAWTLGKRSGQRGNIQDDFTRFFYSYRRHDWLPEWYQAQSE
Ga0209087_100042238F002099GGAVREFYSIAWGVHDPTERYKQMTEWLTKHQYLCKSSDFRVIWNNLSEWAGNADSHQLRGLVVLGYKEALEREKK
Ga0209087_100042243F001739GAGGMTTFTTRITSMYTLNTPEPDYVVNVLYEVTGVDGTNTASIGGNTQFNSADQEGAITPYASLTEAIVIGWIPADAIASAQACVQGQIDSMITPPVSPSSQPLPWSA
Ga0209087_10004225F104706GAGMGRPSKPNTRYFQRTLTDPERIILLSAGKGNICRGFETVLDLYHYAHNQGFRPDMDMSILNIVADKQQPQTEDSMVG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.