NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209087_1000407

Scaffold Ga0209087_1000407


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000407 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27638
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (96.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000332Metagenome / Metatranscriptome1283Y
F002933Metagenome / Metatranscriptome519Y
F021263Metagenome219Y
F035674Metagenome171N
F060611Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10004072F035674AGGAGMKPGQEACLRMAQYQYSCRNQDMMWRWLFTWAAWSDETDFFSDPRMPVFKPKKPRRRWKHLTNTETLAIIKQLPNWQTDHLNTFIFKVLVEDKLKEKNAW
Ga0209087_100040727F002933GAGMIPPLYKWYPMVQPGGEPTKTDALERRAEKLTEDYKQAVKMRKMDEKIDALEFELYVKKAQRNQLSLEIFTNRKLDIYV
Ga0209087_100040728F000332GGAMRWIVLLLLLGLVGAVAKNGCHVREFYGIAYTIHDPTERHKEMMAWLNQNAGHCKSTDYVVIWNNLSEWAGTADSTWLRNKVVHGYKDALEREKK
Ga0209087_10004074F021263GAGGMTEEEREMDLQLAELESEVRRLRKVEQAALAVVKSFSTSIDYNTWDKALDALEAALKEKP
Ga0209087_10004076F060611AGGAGGMENDTTKRFPRTMHEAFNCDNEPISGPYGKEPVWPTYAIFFIVIVAGIILFWSKA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.