Scaffold Ga0209087_1000372

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1000372
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29429
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (78.72%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027776	Metagenome	193	Y
F052463	Metagenome	142	N
F056414	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10003722	F052463	AGGA	VGRVGTQGACGNKKRLEGHLMPGNPKVHRDVALLNELDEEMIFLMFEEGKSISDICIGMGVSKRALDRWIDENDHGAKITRARTLAADKFACELVTIADSVDDANQGKPGYQIKTRQWLAERWDRKTYGTDKAQSVNISIQGLRMEALRHVEVVEQLSTDQMPKLSTE
Ga0209087_100037243	F027776	AGGAG	MMNPLEIEIKKTVFAHLPAVGDFGIVDRSDLATILHSACTEVALAGWARGADSVQRRLDQEMEILRQELKATQTELAYAKAN
Ga0209087_100037245	F056414	GAGG	MKLTEYQRSQLRAAACFGGDQIDKVAASLQRENPAAFWRDNELSQRDFYHEPMSYGFVIPHRSYVERFLPRRKSEYSQEQRQIMEQNHYLETTYQIGVGA