Basic Information | |
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Taxon OID | 3300027734 Open in IMG/M |
Scaffold ID | Ga0209087_1000372 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 29429 |
Total Scaffold Genes | 47 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (78.72%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F027776 | Metagenome | 193 | Y |
F052463 | Metagenome | 142 | N |
F056414 | Metagenome | 137 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209087_10003722 | F052463 | AGGA | VGRVGTQGACGNKKRLEGHLMPGNPKVHRDVALLNELDEEMIFLMFEEGKSISDICIGMGVSKRALDRWIDENDHGAKITRARTLAADKFACELVTIADSVDDANQGKPGYQIKTRQWLAERWDRKTYGTDKAQSVNISIQGLRMEALRHVEVVEQLSTDQMPKLSTE |
Ga0209087_100037243 | F027776 | AGGAG | MMNPLEIEIKKTVFAHLPAVGDFGIVDRSDLATILHSACTEVALAGWARGADSVQRRLDQEMEILRQELKATQTELAYAKAN |
Ga0209087_100037245 | F056414 | GAGG | MKLTEYQRSQLRAAACFGGDQIDKVAASLQRENPAAFWRDNELSQRDFYHEPMSYGFVIPHRSYVERFLPRRKSEYSQEQRQIMEQNHYLETTYQIGVGA |
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