NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000372

Scaffold Ga0209087_1000372


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000372 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29429
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (78.72%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027776Metagenome193Y
F052463Metagenome142N
F056414Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10003722F052463AGGAVGRVGTQGACGNKKRLEGHLMPGNPKVHRDVALLNELDEEMIFLMFEEGKSISDICIGMGVSKRALDRWIDENDHGAKITRARTLAADKFACELVTIADSVDDANQGKPGYQIKTRQWLAERWDRKTYGTDKAQSVNISIQGLRMEALRHVEVVEQLSTDQMPKLSTE
Ga0209087_100037243F027776AGGAGMMNPLEIEIKKTVFAHLPAVGDFGIVDRSDLATILHSACTEVALAGWARGADSVQRRLDQEMEILRQELKATQTELAYAKAN
Ga0209087_100037245F056414GAGGMKLTEYQRSQLRAAACFGGDQIDKVAASLQRENPAAFWRDNELSQRDFYHEPMSYGFVIPHRSYVERFLPRRKSEYSQEQRQIMEQNHYLETTYQIGVGA

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