Scaffold Ga0209087

Basic Information
Taxon OID	3300027734 Open in IMG/M
Scaffold ID	Ga0209087_1000191 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027734 Open in IMG/M

Scaffold ID

Ga0209087_1000191 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	39650
Total Scaffold Genes	62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	55 (88.71%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

39650

Total Scaffold Genes

62 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

55 (88.71%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001937	Metagenome / Metatranscriptome	614	Y
F003539	Metagenome / Metatranscriptome	480	Y
F012001	Metagenome / Metatranscriptome	284	Y
F085350	Metagenome	111	N
F095139	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_100019111	F085350	GAG	MSESESALPLDNTFWEHIEHIDFAIAIPVSENRMLDIISALHDVYETICEGELEEAKMCVTALAAILVASKYDKAEEVWEEFSVREAMFHFDNSLKEVLDEKP
Ga0209087_100019114	F003539	GAGG	MNYIEEYNELVQQLSSEYAKRYGMLERDDIGQELWVWFVGHPRKYKEWSALPQKDRDKLIAKSLRNAAITYCEKEKAKKVGYDMSDLYYYDVSVVEAFLPSIIGETYEIPTKIQDLNSKFGGGALSDGNNWLSLRSDIASGFYRLTDAKQNTLRLRFSVDSPDWAVLSKDMDSTPDGARMKVQRALNSLVKHLGGWKPYHEQDNQEDAAVSDATDVEQTEDTDE
Ga0209087_100019115	F095139	AGAAG	MNNQIMLCWCDGGSTDGKFTEGVVYAALTSSIPIKSAMRVQGNQIGRQRQEALNFWYDKTDFDWILWVDSDIVLTETALKLVWDAADPIQRPVITGTYFISKENEASVMAPYPAVFNWVEGDDYKIAYVHPLPKDALIKVGSAGFGFVLMHRNAVTAMRKVHGSKPYFNETGVGEEFVSEDINFFRMMHQAKVPLYTHTGALVKHMKRFALDVEYYKMFWNSKND
Ga0209087_100019119	F012001	AGGAG	MNKEKIKQIALTYLRSAAAVAAGLYMTGVHDPKTLASAFVAGLVGPALKALDPSAKEFGVVKK
Ga0209087_100019124	F001937	N/A	MNVDVATIVYSYFFVGIAVFAGVAIVARHTIKEHTEELKDKLNRIEYALYNDGKTGLINKVEELLENQQCIRVDVEVLKAKAEQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209087_1000191

Overview

Ecosystem & Geography

Associated Families

Sequences