NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000181

Scaffold Ga0209087_1000181


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000181 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40326
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (81.54%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001094Metagenome / Metatranscriptome780Y
F001599Metagenome / Metatranscriptome665Y
F011647Metagenome / Metatranscriptome288Y
F025215Metagenome202Y
F073073Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100018111F001599AGGVGTMKQDTVSIAWCDNGMVDGKFMQGVTDVMLHSGIEFATTLRSQGNQIARQRDKVINYWYNNKKSDWLFWVDSDVVVSPDTFNILWESKDAVERPIVSGVYFTTDQPEEPLMTPLPTLFNFVNTEESVGVARIHPMPKNQLIKIGAAGMGFVLMHRSVVERIKAVVADAPLFSDIGHGNNFLGEDIYFFALCDKAEIPVYAHTAATAPHMKRFSFDEHYYNAFMGSPKKEEPKSKLITPDKKIITPR
Ga0209087_100018115F011647AGAAGMSSGQRKRHDGFNKTIMRDGMIVILRKDGREKTRLDPKTKEPNKGTK
Ga0209087_100018139F025215N/AVSENQTQKRIDMKLKVHHPSGDVIAEVYDFAAGALLMSLYGDGSYITYKGASVWEEGTDGEGAESYDTTSMVIDSRLISMGVQVDG
Ga0209087_100018140F073073GGAMISSDEKMSTGFSKSIILNDGTNQYSGRLHWDSHDGYSMYWDTSAPPEADRPEFEYVLDCITDLER
Ga0209087_100018162F001094AGGMNTTKLKAIVSTYVRAAVAAVIALYLSGVTDLKTLALAGVAAVAGPVLKALDPASSEFGIGSK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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