Scaffold Ga0209087_1000074

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1000074
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57988
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (88.61%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001530	Metagenome / Metatranscriptome	676	Y
F001688	Metagenome / Metatranscriptome	651	Y
F010754	Metagenome	299	Y
F011067	Metagenome / Metatranscriptome	295	Y
F038590	Metagenome / Metatranscriptome	165	Y
F095361	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_100007416	F010754	AGG	MNDWKLCRDCGDEFSVERWSLGYRHCLFCGEEAARTERMSWCVIQEYTKGNYQFVTTASAHTTLKQTNQKELRG
Ga0209087_100007419	F038590	AGGAG	MRPRHVKVDKLTKRVSQTDYLQMLDEAMKYARIQESKPMLQVRELPIHTKEGVQDAD
Ga0209087_10000742	F001530	N/A	MQITKEFLETEIRDLETEAQKAQNFLIQAQGTIQAYKMLINRLDAPEQQDGTDTT
Ga0209087_100007437	F001688	GAGG	MFKYLWTELKLMLKTVTPIQAVTHELLHAEHALLQAESGVEYATALVAYNKNRVKRLRAYLDKTEEVKEPT
Ga0209087_100007438	F011067	AGGAG	MNCDTGAICPHTPQCDHICQAIETRKIKPYPAIPDDIEPVPQVWQVVGSVLVGFVLVALVVIAALFFFTGLYIWSLLI
Ga0209087_100007439	F095361	GGA	MNFGQNKLIDGLVEDLLKTIHKYDDSLYMATVIGCMEIVKQQLIDEAKEDGHD