Scaffold Ga0209087_1000072

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1000072
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58074
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (87.63%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002597	Metagenome / Metatranscriptome	544	Y
F009328	Metagenome / Metatranscriptome	319	Y
F029973	Metagenome	186	N
F042141	Metagenome	158	Y
F044911	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_100007220	F002597	GGAG	VDIRGPALVYDPRFHSFDSWASLMCELYAPQQLEIPSAQTDWKVWGNGIKAIDVFTNEAIPSTDNYEDWQVWAEALVNAVNPAT
Ga0209087_100007255	F042141	GGA	MKLNVELSNDTIDDIFINRLREDLELLETETVPVFSSEPEIEKQHIGALKGAYKQILSYYGEMV
Ga0209087_100007259	F044911	N/A	MTPAELLHTDAARYATNRKNAYIEKMKQKEVDPMSEDDLNGRWLAHYEGYREGYWVATGAAKFSTDPAKLKEKNNG
Ga0209087_100007260	F009328	AGGAG	MDDGYYCVICSRFLPSDEHGVIVHDDVPHSDMDFAEEEKPQ
Ga0209087_100007264	F029973	AGGA	MSDRFDLEQAILRADMEGDLNLLFDRVCNGPELSQDDMANALLGLITLNSLRHEKLWNIFEDMCHQKKFKDKYEKVD