Scaffold Ga0209087

Basic Information
Taxon OID	3300027734 Open in IMG/M
Scaffold ID	Ga0209087_1000030 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027734 Open in IMG/M

Scaffold ID

Ga0209087_1000030 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	74775
Total Scaffold Genes	113 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	94 (83.19%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

74775

Total Scaffold Genes

113 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

94 (83.19%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007581	Metagenome	348	Y
F010016	Metagenome	309	Y
F014840	Metagenome	259	Y
F018532	Metagenome / Metatranscriptome	234	N
F029418	Metagenome	188	Y
F034908	Metagenome	173	Y
F043777	Metagenome	155	Y
F088231	Metagenome	109	N
F100665	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_1000030108	F088231	AGGA	MAKMTIEELIKEFSNEQGFQFGIDIVMKSLRPGALYGLSASGGTFEIVSWDESNELPAPSSQEIRDEYIRHQTIKEFIDILEQAKLNKKSRVRKTA
Ga0209087_100003016	F007581	N/A	MNMEKITSMLFPVIVSAIAWLLTSMASIQADLISIKSKMPNLITEQGVPTDSPISAEARAKLKEELKVQMGELNVRIRILEEHDMQRKGK
Ga0209087_100003036	F010016	GGAGG	MKKTARNESTGDWLHSKPNNEMFEKNFDLIFRKKKPEETEYELNKSTGEVQKKED
Ga0209087_100003044	F014840	AGGTGG	MIPFSYAVVDSDGEVIRQYRWSVREAKWHKDQGKNVVKLDKPIEVKEDLMALVGECLF
Ga0209087_100003053	F100665	AGGAG	MAKPYIKVVSIKDTNEGDCKLTLDMNQAGREVILQAGIQKALSDYMVANTKKLSFWNKLQICWGILK
Ga0209087_100003056	F034908	AGGAG	MAKFSVVVEVSMDDTYLNQVETWGVEPSDHVATILSETAREKGLVVKASVLESDHTLYERLVKYRDHLIQADAYNDLENEIIARACVGGVCED
Ga0209087_100003058	F029418	N/A	MMTQHQVNEEKKRKFEEDIIEVAVAEYYAYADEHKRERKEKDAKMFYDAMRLGVIRGINFATNQYMQSLKNFEEKKNENKTDI
Ga0209087_100003066	F043777	GAGG	MKLIDGTEVIDNSPNEKAGELAEAIYDDVVFLLDLEGKCITEDEDGNSCNTELGQDLFNGIYEQCMNYFEREGT
Ga0209087_100003080	F018532	AGGAG	MDQTLELLLSRIDDQRKTVLNNLGDGAAKDFASYQNMAGYIRGLSVAESMIKDLAQRMETFEDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209087_1000030

Overview

Ecosystem & Geography

Associated Families

Sequences