Scaffold Ga0209087

Basic Information
Taxon OID	3300027734 Open in IMG/M
Scaffold ID	Ga0209087_1000021 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027734 Open in IMG/M

Scaffold ID

Ga0209087_1000021 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	101662
Total Scaffold Genes	181 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	111 (61.33%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

101662

Total Scaffold Genes

181 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

111 (61.33%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F006141	Metagenome / Metatranscriptome	380	Y
F008554	Metagenome	331	Y
F008752	Metagenome / Metatranscriptome	328	Y
F009749	Metagenome / Metatranscriptome	313	Y
F011584	Metagenome / Metatranscriptome	289	Y
F012023	Metagenome / Metatranscriptome	284	Y
F012868	Metagenome / Metatranscriptome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_1000021122	F012023	AGG	LFLQKEKMTEIDYEKLNERIVEQAYESVLTKEQFQKLIQNKFERAKIYSESLNKCPTFSV
Ga0209087_1000021128	F012868	GAG	MKYYDYDWDLEPNRILLDKELNIDKLGWKHGDCFKVTNVDGQTMLVKLDPLEQFIRGYKVNSNA
Ga0209087_1000021154	F008554	N/A	MGMSIEEEILNKAGNEMAREIDREILWGMLQGIGWTRVMLNRLQDNNHAIDITYWLEENIKNPFERNGRDFIFEDKKDAVNFILRWM
Ga0209087_1000021175	F011584	N/A	MIDYITTFFALFFTDVFYTYYLRSVQNDETLKASMWAVIVFVIAAIAVVNYTTNHWLLIPACFGAFFGTLVGMKIRKKSNVV
Ga0209087_1000021176	F006141	AGGA	MGILEVVVYGFFTAFGWWGANHYVIEPYFPPPMERKVEEKKEKKEDKK
Ga0209087_100002141	F009749	GGA	MTYSWILIVAMYSPGGDFIGKETVKFESKKSCESVRVQLPNLDHPLHVRHKGLCVTRDHWEGKKQMPGVAYD
Ga0209087_100002143	F001008	N/A	MSKATHKPYQWIDGETADRITSLNLKDYRAYLKKELAQWKKNPKTEDNPDGVWLHPEDVTGNIRRIEALNLIINDFITTEDTIK
Ga0209087_100002154	F008752	N/A	MKSQVPAEGILKRNNWGDAIAYQVVCECQDANHDHNVWVEADDHRVTVTTYTTQKSKWWSLNRWQTIWILLTKGHVEYEANIIMTKQQALNYAETLKKAVQDVENFQKP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209087_1000021

Overview

Ecosystem & Geography

Associated Families

Sequences