Scaffold Ga0209297_1060222

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1060222
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1695
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050981	Metagenome / Metatranscriptome	144	N
F078382	Metagenome / Metatranscriptome	116	N
F100656	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10602222	F078382	AGG	MTLRSAMRQTLDLLVVMLAVLLSRTLWVTIGGLYVVWIVHWSDVATLYTLDNAAQIQSFTQLALCRYGLIGSIVLGYLGFTRGSTGVAGYVIDQLNPKDK
Ga0209297_10602223	F050981	GGAG	MKWLAIICLSASSVCAQITDDELSKISKEEIVLTVKHLQSLTAEAKAAADRAIASEARMQAKLVDATNALIDSQSQLLKVDQDIRNLQAQTEEQTRIAAGAKADAVKAQRLADHRGNLLGWLGAGLLCIVCLRLTSILPPPYGFLLPVAAIPAGYWLARLLL
Ga0209297_10602224	F100656	N/A	MTTLKNSLLLLSLCMLCACQTPCPKPLPAVVSIAQVKSSTASASTAVRAAIEDSKETTTEIKRIKTMQDRVDAKSVLILKWLEFQR