Scaffold Ga0209297_1054584

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1054584
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1797
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009213	Metagenome / Metatranscriptome	321	Y
F100664	Metagenome	102	N
F100730	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10545842	F009213	AGGA	MTKYYLRTTKNCYFVQEKPNLKVFYSYSTPVALEIDGILKVSENQWSITTAKHLSWIDNGNKKDRLNREEFNQLLKQHKPEPDFLKTVSMVSSMFGVLMQTEDKSKVNAQKKRFFDNVQGLSFPEDWNTLPEEEKSKRLEKIENFNLTR
Ga0209297_10545843	F100664	N/A	MINKKNWYSTKGWLCDNCQSSNITKLHPETEEDLFCFDCKKRGYQVSEWFIMRNNKKVRVIT
Ga0209297_10545846	F100730	GAGG	MKTKTFNNYLDYINSDENNWSYVELKDFEDAKDKQVKVYFDKQDNEIDVVLINKKKGQKKXKPLAFKLKTILE