Scaffold Ga0209297_1045959

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1045959
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1984
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003714	Metagenome / Metatranscriptome	472	Y
F005588	Metagenome / Metatranscriptome	395	Y
F010765	Metagenome / Metatranscriptome	299	Y
F019449	Metagenome / Metatranscriptome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10459591	F005588	N/A	MPNPLAHSPDMITTIRPNKMPTLWWLCPWAYARTLHMSANAVKAYADRLDDILDIQRSLIEEQAAEIRLLKARVADQNDAIIRGTAITP
Ga0209297_10459592	F003714	N/A	MPNAHHPYTETLTFAGRVLPLKRPMAEYAARRLQAILPQIAALNAAGKSQGDAAEALGTTVGTLRMWLDITGTTWVNLKKRGPYKTNA
Ga0209297_10459595	F010765	N/A	MSPLSNAPQPDDMPVALRDLGFGILIGSAAWLVRYLCSAEKHSLGYIFRRTATAGLTSLLVGIATKGYFSSEGMAFAAAGCAGYASPELVDLLLAKIKAMKGKTPTKGD
Ga0209297_10459596	F019449	N/A	VTTETFTTIVVPGIASLAYFSAGVACFIAHRPALAVMWLCYSIANICLLSTVLRK