Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1033094 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1033094 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2401
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

2401

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (11.11%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001923	Metagenome / Metatranscriptome	617	Y
F003583	Metagenome / Metatranscriptome	478	Y
F005588	Metagenome / Metatranscriptome	395	Y
F014261	Metagenome	264	Y
F053888	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10330942	F001923	N/A	MSPPPPIDPEAIPSELKDGLTASILGGLAMTARLLLSTTPVSPGWVIRRVLAAGITSAVAGYAIAEHIQSPGLRMGAIGAIGYCAPEALDYLLKAFKARAEKEVSGIAGKPHGKKSSGKAKRKR
Ga0209297_10330943	F003583	N/A	MAKRAQAKPSESANLLLAVTLLMIFAGVAALASAYISGYVLDTLQSRDALVMIVTDAGIKSDSATVEQGLSAATLALKAVRDLGWALAVGCLGVGVAVFLRSRRQKA
Ga0209297_10330945	F014261	N/A	MKTLIAIIIFGWLAVVTFCGPELARAINGPEPVKAKVHRTR
Ga0209297_10330946	F053888	N/A	MNQSLISFIKATDGRVLTLARPVLPHAARRLVSVLPQLNALNTAGKSQADAAAALDVSVGCIRNWITLANIPWSNLNKRGPYNISRNA
Ga0209297_10330947	F005588	N/A	MTTIRPNKMPTFWWVCPWAYARVLHMSANAVKAYADRLDDILEIQRSLIEEQAADIRLLRQRVRDQDDAIIRGTAITPDVTPYRDETIHE
Ga0209297_10330948	F000957	GAG	MSNFQHLDGMRNLLAEIYEVNERIMTGDICSAKSAIASTNVKKILAHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1033094

Overview

Ecosystem & Geography

Associated Families

Sequences