Scaffold Ga0209297_1029978

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1029978
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2536
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034568	Metagenome	174	Y
F041003	Metagenome	160	N
F102843	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10299783	F102843	N/A	MIKIKRWTSNFFWYMNKNRYEHRITLSERFRVFWKLRDEKTWDEKFQEWRSMKP
Ga0209297_10299788	F041003	GGA	MKAWTPPTDYLDLPKPPQHYKYVWLRFDIKTKKFKYPLVKHKQLKNKNRFPFIYIKHYGKCVGIEGLTLAKVKI
Ga0209297_10299789	F034568	N/A	MVQIMNVKEYGVKSSWDGWRTFAYVSDGTKMGLMPITWANELFKTRQQAKTFINDLATKNGWKK