Scaffold Ga0209297_1016914

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1016914
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3501
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y
F015420	Metagenome / Metatranscriptome	255	Y
F071222	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10169142	F003327	N/A	MTEFTQLAIKVQDEIANGDYTHQKYLQFRQWYFQSYEGSKRNAARDFAMFDLMYGLDVPIKNDDNEDI
Ga0209297_10169143	F004234	N/A	MNFIDLYKNGNQYISNWTTDYDSDVYIAGTIEPFTYDATETDDGDMSLFILSDANLNLLKSKL
Ga0209297_10169144	F015420	N/A	MKKLIKYFTPVGEEQIAIAKAFIIVTSVTLSILFLFTFLEFIL
Ga0209297_10169145	F071222	N/A	MDKQQIMKIILAEEASLLDQAREMREAFGNGDEATKRAYSQWSVIFNLIEKINEKTN
Ga0209297_10169147	F001808	N/A	MRYLAIILLLSSCSAQYHLNKAIKKGYKCEQTGDTIRITTLDSIPVIIHDSIAWEKFITTKDTIIKYNTVYVPKTRLDKKIEYKLKIKTIYKDRIVEKAQAKATRPRTRGNLNLLFVGVGIGLLLSYLFKFAREKYLF