Scaffold Ga0209297_1015669

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1015669
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3644
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F009402	Metagenome	318	Y
F038093	Metagenome / Metatranscriptome	166	N
F054024	Metagenome	140	N
F105188	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10156692	F006546	N/A	MKWKYIGNRTGDAAKGEQYIVEADELTELYMKNQPYPQTVNVYVVQPPSPRNNWSKSQVGDIIKICNPYYEMMKYSHPGFVPVKE
Ga0209297_10156694	F009402	GGA	MKKLDEQFESAGFKYKQTHREDMFAIYERGYINTTKDPHYESIKIQSHNGMEIAGNKIPPSEYYPSSNSWGRHGYTCITKKDAYTRLDRMMKEDVINKEAANKKAERKNAK
Ga0209297_10156695	F038093	N/A	MDKIKINFFILKFGAILHTIFVFPILYMADIYANTPMFWAFLLNHIMFGYFILVQGCALGIKQTINIIAHQDATKAREEDINKNN
Ga0209297_10156696	F105188	N/A	MRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYIFRNKLE
Ga0209297_10156697	F054024	N/A	MSDTFSNHFYIEGPYEDLLNVTKDLDFTDGSIDYDGWEIEGGSAVLHFDGYYCPLDELEKASAKYPSLKITFRFTQELLIAGLLIYEDGKIKLRSYYNWDTGTSSVTTAQ