Scaffold Ga0209297_1011993

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1011993
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4224
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017130	Metagenome / Metatranscriptome	242	Y
F034923	Metagenome	173	N
F063695	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_101199310	F063695	AGGCGG	MKITAKDFDNLTDTVMGWKGNDWELQGDRFADKPSFDWAVVCWYDTVISMIMARTFLEQNDYAFQELYDHNMETWVLLTNYDSFNMAVSA
Ga0209297_10119936	F017130	GGAG	MGTSESEGIMGYAEFHTADGWVNVEDIPMIDTVNCQMCNEPTLASDITITARIEQGVVVAGTWSCNKCRAVNG
Ga0209297_10119939	F034923	GGCGG	MTNNDKLLIICLIGAGISFIIWALQSYKEAYERGHRDGWHKGRAVNRADFWQE