Basic Information | |
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Taxon OID | 3300027733 Open in IMG/M |
Scaffold ID | Ga0209297_1011993 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4224 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F017130 | Metagenome / Metatranscriptome | 242 | Y |
F034923 | Metagenome | 173 | N |
F063695 | Metagenome | 129 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209297_101199310 | F063695 | AGGCGG | MKITAKDFDNLTDTVMGWKGNDWELQGDRFADKPSFDWAVVCWYDTVISMIMARTFLEQNDYAFQELYDHNMETWVLLTNYDSFNMAVSA |
Ga0209297_10119936 | F017130 | GGAG | MGTSESEGIMGYAEFHTADGWVNVEDIPMIDTVNCQMCNEPTLASDITITARIEQGVVVAGTWSCNKCRAVNG |
Ga0209297_10119939 | F034923 | GGCGG | MTNNDKLLIICLIGAGISFIIWALQSYKEAYERGHRDGWHKGRAVNRADFWQE |
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