Scaffold Ga0209297_1010753

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1010753
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4475
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011740	Metagenome	287	N
F017799	Metagenome	238	N
F034845	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10107535	F034845	AGGAGG	MTASRTKYWREYNRRNAAKKREQYAAFRERNKEKINAGKRALRAAGKVAPRKASAIRAVKRTVTKPRTDEGKAEAMLTLREKFAAFRANRAEGKE
Ga0209297_10107538	F017799	GGAG	METNNDNERRELEALRFSSRAARAITTLEVQRKAIGREYGERIKKIKALILILQQRESLGQMGIEGIDAVEITPELRKLIYNPVGDLT
Ga0209297_10107539	F011740	N/A	VNSITTADRFATCVTTYDAARGTAQLSCEIMERLVEMHEMKFGSASLLCARLSTLADVSPSMFLTTIRLGSGDVHAVRQSFAEMAEGTGRTRQALHYEWAHEVAKVSMIFPELAQLMADYRQSTDEPERVGDGA