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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027733 Open in IMG/M |
| Scaffold ID | Ga0209297_1010415 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4554 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F032276 | Metagenome / Metatranscriptome | 180 | N |
| F036694 | Metagenome | 169 | N |
| F067741 | Metagenome | 125 | N |
| F076085 | Metagenome | 118 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209297_10104151 | F032276 | N/A | MIPTNVNNLTIKEFIEYENIRTSSLENIDKIIQIASSFTDISVSEYENMSFNELEKVKSKVLLLINSKPNTRLKNTFWHDGTRYKACKDEKDFKTNQYTALKQYETDVINNLHKILALIYVKCPVFSKYKFNSDNVEEISDVIYNYGKVGDIYGTLFFYSNRSEKLKADLLNSLEEVQKEIAI |
| Ga0209297_10104156 | F036694 | N/A | LSIKTIVDKHFADNYTYYKSVCKRYYNGRYLAEDLLHELYIKLSNSNPEQIERYHKANKLNCLGLLIIKDLFRHRTQKLFHIDGNTSNLFEAANFEVLDFKQLDEEYFQIDEILIDKIKNCIFDGLLNQDHDIEVFVMAQIEPLYRMEQRTKINRSSLKKAYENARIKLKNQLK |
| Ga0209297_10104157 | F076085 | N/A | MKDLLSVSEFATLHSVSHQAIYYKIKTNQIKYIMIGKTKFIEKTSKYKRRAKNNCFDNQVVTYKSKNKH |
| Ga0209297_10104159 | F067741 | N/A | MKKFKIEFLDCDKCIAFTKLTKWETIEDCRLYAYVVMMNNVETIQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |