NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1010187

Scaffold Ga0209297_1010187


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1010187 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4613
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002843Metagenome / Metatranscriptome526Y
F018915Metagenome / Metatranscriptome232Y
F032259Metagenome / Metatranscriptome180Y
F035286Metagenome / Metatranscriptome172N
F037116Metagenome / Metatranscriptome168N
F068565Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_101018710F035286N/AMPFQSSDALDDQMLLDGSTGFSTGVISATRPDGIPATSMESAINMDYDDFGNLVTRLGAVSLAGNSIAANWEDIITNWESTTSNFGSNLPINATVLSGFYFDTAASERLVIAVNDLNTSVKSLYYGSPGVSYNLISGSTLNASASY
Ga0209297_10101872F068565N/AMLTERTIFSLCEVLPNTTLQVRLADQIVDGEAVKASTFRRYCLPPGSDLAGQPEQVVAIAGAVWTPAAIAAYNANLQPTIQ
Ga0209297_10101873F002843N/AMIVPVNIVAVQVNQNNSLFVTTGVDYNSDGAIAGSEITAQYTLNPGDDLTGQPVEVVNIANALWTPAVVAAYKAANPVVEAAQPKSE
Ga0209297_10101874F037116N/AMEPTNSSTSPGLSLAAAAGATAVSFLPVLTDWVRLITALIGLLCACYAAFRLFRSK
Ga0209297_10101876F018915N/AVNWIYQILKALLDWFRETPPTDVQHGKAPEALKSDLADRIVDLPGLPDDQGGPSAKR
Ga0209297_10101877F032259AGGTGGVPSGDPVMLAQPTTASVYGFDSDKKLVGPSKVTLPAGWYVLPKN
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