NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1009910

Scaffold Ga0209297_1009910


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1009910 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4684
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F002038Metagenome / Metatranscriptome600Y
F003714Metagenome / Metatranscriptome472Y
F005588Metagenome / Metatranscriptome395Y
F074555Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100991010F000957GGAMSNFQHLEGMRNLLAEIYEVNERIMTGDIVSPKAAIASTNVKKILAHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV
Ga0209297_100991011F005588N/AMPNPLAHSPDMITTIRPNKMPAFWWVCPWAYARTLHMSANAVKAYADRLDDILDIQRSLIEEQAAEIRLLKARVADQNDAIIRGTAITPDATPYRDKTIHE
Ga0209297_100991012F003714N/AMPNAHHPYTETLTFAGRVLLLKRPMAEYAARRLQAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDITGTTWVNVKRRGPYKTNA
Ga0209297_10099103F002038GGAMTNTTPAGIERIARTVSGQYALLLLLDGYPYVELTARKHADFLSDLGLWKRKTHPSLARSQVRFFTLAPNGEIKELAFK
Ga0209297_10099105F074555N/AMSNPHDPLDPMAFLNNAIANAHAQNELLAANARIRQLEGRLEAMREAGDAIWYCVRHAQTTGPSELIEAIAEWQEARNHG
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