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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027733 Open in IMG/M |
| Scaffold ID | Ga0209297_1009232 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4867 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (66.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010618 | Metagenome | 301 | N |
| F019834 | Metagenome | 227 | N |
| F060914 | Metagenome | 132 | N |
| F101144 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209297_100923210 | F019834 | GAGG | MKELKFTITGTIFVPDNAEYEYDFENQIYSFKINDKTYSLIAGLEADDKEIIVTDENLKSHDIKPVEYEDAYFED |
| Ga0209297_100923212 | F010618 | GAGG | MTLRELILKLQELENKYEQYSQDTEVVLAIHSKNEFNPEVNLDYIDEVLHPALDTLSGYICRIVLCGEFEQED |
| Ga0209297_10092325 | F101144 | N/A | MEAKTFTYYMTERHGYVETTRAYLRKLKISKLISPYSKQSRNKVYIEEDGDLRIFIKRHTVAGIEITLKEAEKEQRFFDNMLNFKDEYCQDKQYDGFKTDWTMLQRTFFTKPDSIKHVVNSTFETSDGKCLKIVPAFYLDGKPLNEAQLKRLGIELTKVRTDECEVSYDD |
| Ga0209297_10092328 | F060914 | AGCAG | MQLKRLIKVRSDISASIYPIELYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNARIIQDINELKAQGIL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |