Scaffold Ga0209297_1009114

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1009114
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4902
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F009264	Metagenome / Metatranscriptome	320	N
F093350	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100911411	F009264	N/A	MRAYLEFSLMDQEVDHLTKIGFGAKILDAYEMENGFVAVVVDWNSKTDSHKLKYASQGCVTYSSDKIVGVELEFRDYSYRNDDCEIYPIISVKLDYDDSNKKMDFVCFHNLKYQAVVYFAPETWSCSRKSKKINF
Ga0209297_100911413	F000962	N/A	MNIHVPEEIKIKYPQYEFRGKQREINNRIVIEAYNPATEQTFFYSFEEDFFWIAGQIPDYKLQKV
Ga0209297_10091145	F093350	N/A	MLTKDQAFDISEFIYKNGHESLWRVGDNLEKILNGLAVNPNKDQIISKFVAKNGAKTLHTLNIAIFKLVDQLMLSEEAAAVAQHE