Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1008180 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1008180 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5210
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5210

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F003904	Metagenome / Metatranscriptome	462	Y
F014128	Metagenome / Metatranscriptome	265	Y
F028781	Metagenome / Metatranscriptome	190	N
F035227	Metagenome	172	Y
F056337	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10081801	F028781	N/A	MIKSFKLFIVSVLASVAAFAADTNSTLNASINAGYNNHYIVNGLAKTGGSAFAGFDIGKTYFGVDAYVGGIVLPNSNNIDESHWKVGVGKALKITEKFSLRGDLQVLRHQSSILGGRNSTEIAPKIALVNPYLTPYLRGSHDFNLGQSGYIVGVERPTDVFGWFTVTPAV
Ga0209297_10081802	F056337	N/A	MSEEYSQNSYDAVLSRMEQKLDTISDNIQDIKKSHKDLETRVAGLEYFKYYLAGIVAAVSIGANYLMNKIKGV
Ga0209297_10081804	F014128	N/A	MDQLQKMGIQIGFLISGMFGAILMATKNNKTDAKSVILSLVGGMSAANFLTPVLVDTLNIVNIKHQNGVAFIAGFLGLKLVELVSEKFLEKVGHKSKPKKIIKRKKI
Ga0209297_10081805	F003904	GGA	VNVLVLNIKKYLFFALLPTAILVILALSSLKDIEQGYARFRFGRDITLYLRKSTDLLTYLGSAYTTTSDKKFLNQFNEHLKEREKYFNEEIIINKMLTQEELKEFRKGLDISNDLAKDVENAAFEKMDNKAFFSDKYLDYKNKIYENINNFRTLINDSSENIIKNETKLLNIYLYCLAGIVLTLVYLIKQENPTSTKSKPIKKKPIKKRKQ
Ga0209297_10081806	F001732	N/A	MTFKLPIFIILVFLFTGCFSTIKPSKQIDDNQKIIAKEEKKVDNTLVEIEKNDKGKKIQTSGLSIGIQHSLNQVTNAPVQVDTALKLNERVISIVGSPHIDETKRIKATVDLLNSALVEERKKGEELLTQRDELINKLQKEKSELNQKYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFVFSALTAILIFTVVFVILRLLATVHPAAGAAFSIFNMLGSSVISIVKALTPKAFEMCNFATKEKVEEFKSPLVKIVDVIQELKEKQKESPDRVYPLSELLKRFDKEMDSHEKDLIEEILKEQKWIK
Ga0209297_10081807	F035227	AGG	VNDNVSNIHRAVNVFTLTDKEIKKYSLVKIGELFEKNDYILLYDDQYVKIGDGNLLLKFKITKENSVYRKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1008180

Overview

Ecosystem & Geography

Associated Families

Sequences