Scaffold Ga0209297_1007620

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1007620
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5410
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F015209	Metagenome	256	N
F048994	Metagenome	147	N
F072322	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10076201	F072322	N/A	RPVCRRGKVMETVDFVNATEFFDGMELGHVESDQFLSKFTYGDIRTTFTLVSRGTFLSYLKSFITDCEDIYEKDVVMEALRDYNLSVDVRIKYVNIEA
Ga0209297_100762010	F004583	AGGAG	MRTNRNSDRLREILVSTRHQIVSLKDIQMDMLRTDSKVANQIATQISALEEVYKHQLSLVSLAENVEPKRNGWFSGHFKTKEDRLANIMD
Ga0209297_100762011	F048994	N/A	MIGTVKIEFGAMNLYVNGVCVATTSTIAGIKHAAKRYNLQGYIMVTG
Ga0209297_10076204	F015209	AGG	MNNYRIKALSLWSALLAEERWHKFENTNCKPSCKGWNGWAPYCECESNFCTFKPNGELADMVLIIEARPLEF