Basic Information | |
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Taxon OID | 3300027733 Open in IMG/M |
Scaffold ID | Ga0209297_1007620 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5410 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (53.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004583 | Metagenome / Metatranscriptome | 432 | Y |
F015209 | Metagenome | 256 | N |
F048994 | Metagenome | 147 | N |
F072322 | Metagenome | 121 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209297_10076201 | F072322 | N/A | RPVCRRGKVMETVDFVNATEFFDGMELGHVESDQFLSKFTYGDIRTTFTLVSRGTFLSYLKSFITDCEDIYEKDVVMEALRDYNLSVDVRIKYVNIEA |
Ga0209297_100762010 | F004583 | AGGAG | MRTNRNSDRLREILVSTRHQIVSLKDIQMDMLRTDSKVANQIATQISALEEVYKHQLSLVSLAENVEPKRNGWFSGHFKTKEDRLANIMD |
Ga0209297_100762011 | F048994 | N/A | MIGTVKIEFGAMNLYVNGVCVATTSTIAGIKHAAKRYNLQGYIMVTG |
Ga0209297_10076204 | F015209 | AGG | MNNYRIKALSLWSALLAEERWHKFENTNCKPSCKGWNGWAPYCECESNFCTFKPNGELADMVLIIEARPLEF |
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