Scaffold Ga0209297_1007365

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1007365
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5525
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F008494	Metagenome / Metatranscriptome	332	N
F033793	Metagenome / Metatranscriptome	176	N
F076074	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10073651	F076074	AGG	MSDYNGWKNETTWTVNILLMETIEQLVKSGYSLNDVASHFYKEWKIDELNWHVNQIFGCAWKQIDWWTLYARAEENVKNSAESIAK
Ga0209297_100736510	F003750	N/A	MNEEILHRVMQVVIYTGGIVAFWQITKHMPKALYTLLECITVMTFSVLLLTPFSMIIEYVLGGNIHTTMMFVGCLATVSLLSTMWMVMVQSSRELQGKKQYQYVVL
Ga0209297_100736511	F008494	AGAAG	MFMNAVGQYTTAIDKTADSNINYRKSVYALEDAVNLIYREVDPKELGSNAEARNAKVSEKTQDLIYAKREAEFLLETARANESRIKAEVDQIKYIIRALEVKEEA
Ga0209297_10073652	F033793	N/A	MSKIYRMILGQDPNSTRPIGTEKTLKEAKEYILSRAYNNDYCAIYVADNENPAGELVGRWVIKNKKLTSFEKKSKPIDYKKQIF