Scaffold Ga0209297_1007240

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1007240
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5573
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027400	Metagenome / Metatranscriptome	194	Y
F047564	Metagenome	149	Y
F063332	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100724011	F047564	N/A	MKPTPTSTDLEKATSCPWLSQLKPYSSQETFLEYLTNHYALIAMNPATIEVARYRTKELKKEFPTLGILIAKRIKELKDEMS
Ga0209297_10072405	F063332	GAGG	MTNQNELQAIKAFVRGIIEGIKDTHEPEDIDFYLEDYWNAWDETLDVNIWLDESDSQRYLATLYQVVDGVRDNSNFQRLDYLQN
Ga0209297_10072408	F027400	AGG	MTNLEIKQKLEQAQALLSDVYHWADMPMSNGLQITPDKTNPEIVSLMSCADGCISEALDSLQEIA