Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1006941 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1006941 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5707
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5707

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (69.23%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000980	Metagenome / Metatranscriptome	814	Y
F002207	Metagenome / Metatranscriptome	583	Y
F002245	Metagenome / Metatranscriptome	578	Y
F004051	Metagenome / Metatranscriptome	455	Y
F036238	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10069411	F002207	N/A	MYNNPISTKGYKMPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQETYGMGDISTMGFPTKIEQVSYSNPIFSFHNIHSYKDDGITDEEYACQPSRGNYDIQNDPDWFRKSVEFAKTQKDWYSWNTSNWGTKWDVAVRDGDEYPNTELLE
Ga0209297_100694111	F004051	GAGG	MTIEGKLYQIGDLFTTLKSKKTGVIKEIHPQASGSVRVLLELPSKETRWTSVSAKTLLG
Ga0209297_100694113	F002245	AGG	MLKYSYTNNERLQMSNLMTVPHTVVFEAIIDLDKIPDNLLPALMALDQSSIEQMCKEATLHALTESNVLQTANEFNTWAEVTIKGDK
Ga0209297_10069412	F036238	AGGCGG	MGDRANFGFRQSNGETIVLYGHWAGHDMLGNLASAVEAARSRWTDESYATRIAVSHLVGDQWHDTTGWGLTVNSILDNEHKIPLIDWSTGTFSLHEEAPWSESTEYKVRGMQDEAMFTMTLDSFINKYARATV
Ga0209297_10069416	F000980	N/A	MTNELVSTKYTFACDPDNCDVLIELTSSDGFGFPSGVMEITCPCGRKPVLLSVVTATIAPITQTKEEKMEDTTTPAVTIPDTYNSNLLVTYKVIRGYSDAEYATDKVASIEWDLHNGRQSQKRVTTLLSQIDAVKEIICEAYADSGDQDTLRAIAEALSIELIKEVEFTASIEVTGTYSYNILENDYDLDLESEVTDALYADSNNGNIEIGDTEVCNVREC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1006941

Overview

Ecosystem & Geography

Associated Families

Sequences