Scaffold Ga0209297_1006063

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1006063
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6154
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F007029	Metagenome / Metatranscriptome	359	Y
F015095	Metagenome / Metatranscriptome	257	Y
F023592	Metagenome / Metatranscriptome	209	Y
F027413	Metagenome / Metatranscriptome	194	N
F029049	Metagenome / Metatranscriptome	189	Y
F030767	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100606310	F029049	GAGG	VVVCRMSQLAKVILDRSQEITAHKVGLERTIVRNANTGDASNFGQVYKNWHELVWQEAEGASAETAVANYFGDYAFVPKIHNAHEEADVGENIEVKWTKHTNGHLILQNRGPGRPNDVAILVTGWSPVYLLLGWMPVHMAKVPKYKHPYQDNYWVPRSNLFEMQYLKRSQYGV
Ga0209297_100606311	F030767	GAGG	MAYKTKCRLCAKVTEHIERVVTDNLPPYVKALQCVKCGVMGIVMMEDVNETS
Ga0209297_10060632	F027413	GGAG	MTWLPEWRITIGTTVYDTVLSVTMATGRDDIDLQCNAGYARLEIVNTNNSAFDIDVTDVLTLELKNSAGTYIPVFGGAVSDFGISVRSPEETGFVTIGNILAVGSLAKLTKALFPDALAKDEDGNQIYDILNELLINSWNEVAPALQWQDYDPTTTWANAENVGLGEIDQPGLYEMISRAADPYSSYNLCAQIAQSGLGQLYEDKAGRVCYADADHRTTYLSANGYTTISANYATPSSIKSILQIGKIRNSLVFKYGNNYANTASAVDNDSVATYGRYQRDVTSNLHNLADVNTVMARDLGLRAIPREQLQSLTFRLDSNNLPDAERNKLIDVFFGQPMIINDLPINMFNGSFNGFIEGFAIKATPAYVDMTLTLSPTDFSLVAPQWNTVSPANLIWTGVNATLEWENAFGGLT
Ga0209297_10060636	F002269	AGGAG	MKEQAIAIGKSYLRSAIACAAALYMSGISDPKVLANAFIAGLIGPLLKAVQPSEGQFGVT
Ga0209297_10060637	F015095	N/A	MERAQLVIGITLGVITILGLWAGLIRKLVIFYLSELKPDGNGGHNLAGRVERIEQRVDRIYEILLEDRLAK
Ga0209297_10060638	F023592	AGG	MNSLDILVGLGACALGFLFMVIGYSIGYREGHGEGFVRGRAIAKALKESEAI
Ga0209297_10060639	F007029	GAGG	MGFLDGYEDVNARIKRFRSEFPSGRLVAFIESFDIEKGTILVRAEAYREYEDMVPSAVDYAFGNVNTYPQNMRKWMVEDTITSSYGRVIGLLTPSLEHNSRPTVQDMEKVETLPASADPWSTKASIEDMATMATAIVEIGTQLGGELVAEAPRCPHGTMIWAEGKAKSTGKPWAAYKCTEKLRANQCTPYWHVLGSDGKWKPQL