Scaffold Ga0209297_1005477

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1005477
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6507
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054683	Metagenome	139	N
F060728	Metagenome	132	N
F078411	Metagenome	116	N
F085381	Metagenome / Metatranscriptome	111	Y
F085391	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100547711	F078411	N/A	MDYNKHTDEVLERIQAHQILEILATANHSIDQALKRIQELEHNSMMFLDMRPTREIMDDINALHLHLHFLDSAKSFAKNEIHEIGFYLN
Ga0209297_100547714	F085381	N/A	MKTVLEQLMELKDKISAIEVAVCGETICDDGACGCGCDESPVEVVDETPKSAISQYVVTEDDKYAGHVHLTRAEMIDFATRLTERVIESVKKAVTDMELNADDIITLELNSWSNVIEVELDNGTLANNVNSEIEDAVNLDPDSISDEIDDIFGDMYLERIS
Ga0209297_100547715	F054683	N/A	MNKTESRKALNKLVFEMVTSLGYNIDDDGDGGRVTFIKPNFKNYHDSMEYHRSYFDICVLDDASDVVKEDAKTIEWFIETQRKALNI
Ga0209297_100547719	F085391	N/A	MKFRSDNEAPVTAVETAIENILVNNGYDASDIQFRILKDNERYLRIGYWQRLNEDIRAQLSGLVVSEFDMYDDDCGYLFSYEIKH
Ga0209297_10054774	F060728	N/A	MSQKGRPVVEGSARQARLAARAARVAANGGVIKRGRPSKPKAEQAEVDQVEVEQTEATPE