NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1005169

Scaffold Ga0209297_1005169


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1005169 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6743
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017969Metagenome237Y
F027776Metagenome193Y
F039985Metagenome / Metatranscriptome162N
F056414Metagenome137Y
F079788Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100516910F079788GGAGMDTDDEIESWASIVIGLIASVFFFIGLMAVVAAACMAFGYYTYQPLCGTVAALFTQECKL
Ga0209297_100516911F017969AGGAGMIHILYIPVLFICMNGNCEFMQAQTSYKSEQQCRAVVDVQKENLQKMALKGGQMVTQIEGTCITLKGGML
Ga0209297_10051692F039985GGAMLNLSNNNGSGNSYIRFAPQANAWTNRDGDEIQLKKVVMDLDTVQTGWLMIGAGVRDWQPDEVLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFQKIYNEADKAAGDNDGKLPVIEYVNSTAEKVGKGNTRVPNFKLVSWVARPAGMNADGEDFVEPEPAPLPVRKAAKPAPAPVMDDEEFF
Ga0209297_10051698F056414GGAGMKLTNYQRSQLKAAACFGGAQIDKVAASLQRENPDAFLRESELHQRNFYHEPMSYGSPVPHRSYVQRLVVRRREQDNERDQVMAQNHYLEYTHQIGAAA
Ga0209297_10051699F027776N/AMVVRMMNPLQVEIAKTVFAHLPAVGNIGLISREELATMLHTACTDAALAGWARGTETAQKRLDQEIEILRQELKSIQTELAYAKAN
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